Commit 0dbf87bb authored by Hyun Soo Kim's avatar Hyun Soo Kim
Browse files

better command names, ProteinFactory is no longer singleton

parent 85e1caa5

src/Main.java

+3 −4
Original line number Diff line number Diff line
@@ -14,8 +14,6 @@ public class Main { 
    static boolean verbose = false;

    static int MINUTE = 60 * 1000;



    public static ProteinFactory proteinFactory = ProteinFactory.getInstance();



    public static void initDb(String dbName) throws IOException {

        // Load the database

        moleculeDb = new MoleculeDatabase();
@@ -24,6 +22,7 @@ public class Main { 
            moleculeDb.load(dbName);

        }

        moleculeDb.name = dbName;

        ProteinFactory.initAminoAcids();

    }



    public static void printVerbose(String s) {
@@ -49,10 +48,10 @@ public class Main { 
                verbose = !verbose;

                moleculeDb.verbose = verbose;

                break;

            case "--manySimple":

            case "--makeManySimple":

                ProteinFactory.manySimpleProteins();

                break;

            case "--fewComplex":

            case "--makeFewComplex":

                ProteinFactory.fewComplexProteins();

                break;

            case "--marco":