Commit e212698c authored by Phuong Khanh Tran's avatar Phuong Khanh Tran
Browse files

Update MoleculeDatabase.java

parent abb6a52b

src/MoleculeDatabase.java

+16 −20
Original line number Diff line number Diff line 
import edu.bu.ec504.project.Molecule;



import javax.swing.*;

import java.io.FileInputStream;

import java.io.FileOutputStream;

import java.io.IOException;
@@ -15,30 +14,28 @@ import java.util.HashMap; 
public class MoleculeDatabase {



    public HashMap<Integer, ArrayList<Molecule>> db;   // Molecule database

    public JTextArea outputTextArea; // Reference to the text area in the GUI



    public boolean verbose = false;



    public void printVerbose(String s) {

        if (verbose) {

            System.out.println(s);

        }

    }



    /**

     * Constructs a database

     */

    public MoleculeDatabase(JTextArea outputTextArea) {

    public MoleculeDatabase() {

        this.db = new HashMap<>();

        this.outputTextArea = outputTextArea;

    }



    /**

     * Print contents of the database to GUI

     */

    public void printDb() {

        int size = 0;

        for (ArrayList<Molecule> molecules : db.values()) {

            size += molecules.size();

        }

        outputTextArea.append("Database Size: " + size + "\n");

        for (Integer atomCount : this.db.keySet()) {

            outputTextArea.append("\n# atoms: " + atomCount.toString() + "\n");

            System.out.println("\n# atoms: " + atomCount.toString());

            ArrayList<Molecule> moleculesWithSameNumAtoms = this.db.get(atomCount);

            for (Molecule molecule : moleculesWithSameNumAtoms) {

                outputTextArea.append(molecule.moleculeName + "\n");

                System.out.println(molecule.moleculeName);

            }

        }

    }
@@ -48,7 +45,7 @@ public class MoleculeDatabase { 
     */

    public void addMolecule(Molecule molecule) {

        if (molecule == null) {

            outputTextArea.append("molecule == null\n");

            printVerbose("molecule == null");

            return;

        }

        int numAtoms = molecule.getNumAtoms();
@@ -68,14 +65,14 @@ public class MoleculeDatabase { 
        // Retrieve the partitioned array list based on the number of atoms

        int numAtoms = molecule.getNumAtoms();

        if (!db.containsKey(numAtoms)) {

            outputTextArea.append("no ArrayList with correct # of atoms" + "\n");

            printVerbose("no ArrayList with correct # of atoms");

            return null;

        }

        ArrayList<Molecule> moleculesWithSameNumAtoms = db.get(numAtoms);



        // Iterate through the array list of molecules with the same number of atoms

        for (Molecule dbMolecule : moleculesWithSameNumAtoms) {

            outputTextArea.append(dbMolecule.moleculeName + " vs " + molecule.moleculeName + "\n");

            printVerbose(dbMolecule.moleculeName + " vs " + molecule.moleculeName);

            Molecule result = dbMolecule.areMoleculesEqual(molecule);

            if (result != null) {

                return result; // Return the isomorphic molecule
@@ -103,12 +100,11 @@ public class MoleculeDatabase { 
        ObjectInputStream objInStream = new ObjectInputStream(fileInStream);

        try {

            this.db = (HashMap<Integer, ArrayList<Molecule>>) objInStream.readObject();

            outputTextArea.append("Database loaded successfully." + "\n");

            printVerbose("Database loaded successfully.");

        } catch (IOException | ClassNotFoundException e) {

            outputTextArea.append("Error loading database: " + e.getMessage() + "\n");

            printVerbose("Error loading database: " + e.getMessage());

        }

        objInStream.close();

        fileInStream.close();

    }



}